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Simple Oritatami simulator at Mac App Store analyse
Nicolas Schabanel
Version
1.2
Size
4.36 Mb
Updated
3 years ago
Released
18 Aug 2021
Description
OS simulator is an iPad app that runs arbitrary Oritatami models efficiently.
The Oritatami model was introduced in 2016 in (IJMS 2019) to study the computational potential of RNA cotranscriptional folding as first shown in wet-lab experiments by (Science 2014).
In Oritatami systems (OS), we consider a finite set of bead types, and a periodic sequence of beads, each of a specific bead type. Beads are attracted to each other according to a fixed symmetric relation. In any folding, a bond is formed between any pair of beads located at adjacent positions and attracting each other. At each step, the δ latest nascent beads in the sequence are allowed to explore all possible positions, and adopt only those positions that minimise the energy, or otherwise put, those positions that maximise the number of bonds in the folding. δ is called the delay. ``Beads are a metaphor for domains, i.e. subsequences, in RNA and DNA (and are thus not limited to 4 types only). The Oritatami model has proven to be a fruitful framework to study molecular reconfigurability, one of the most promising directions to reduce error in wetlab molecular implementation as error might be erased by reconfiguration later on.
Oritatami systems have to be loaded into the app as a .os file.
More info at: http://perso.ens-lyon.fr/nicolas.schabanel/OSsimulator/
Estimates
Availability
Devices
iPadAir
iPadAirCellular
iPadMiniRetina
iPadMiniRetinaCellular
iPadAir2
iPadAir2Cellular
iPadMini3
iPadMini3Cellular
iPadMini4
iPadMini4Cellular
iPadPro
iPadProCellular
iPadPro97
iPadPro97Cellular
iPad611
iPad612
iPad71
iPad72
iPad73
iPad74
iPad75
iPad76
iPad812
iPad834
iPad856
iPad878
iPadMini5
iPadMini5Cellular
iPadAir3
iPadAir3Cellular
iPadSeventhGen
iPadSeventhGenCellular
iPadProSecondGen
iPadProSecondGenCellular
iPadProFourthGen
iPadProFourthGenCellular
Pricing by country
| Country | Price |
|---|---|
| Canada | free |
| China | free |
| France | free |
| Germany | free |
| Italy | free |
| Netherlands | free |
| Portugal | free |
| Spain | free |
| UK | free |
| India | free |
| Japan | free |
| Korea, Republic Of | free |
| Poland | free |
| Russia | free |
| Turkey | free |
| USA | free |
| Ukraine | free |
